plotSummary {PING} | R Documentation |
This function use Gviz package to summarize the nucleosome position prediction from postPING.
plotSummary(PS, ping, reads, chr, gen="gen", from=NULL, to=NULL, FragmentLength=200, title="", scoreThreshold=0.05)
PS |
A |
ping |
A |
reads |
A |
chr |
A character string for the chromosome name. |
gen |
An optional character string for the genome name. |
from |
An |
to |
An |
FragmentLength |
An |
title |
An optional character string that can be prepend to the automatically generated title. |
scoreThreshold |
A |
This function returns an invisible list
of tracks. The tracks can be used in other Gviz plots.
Renan Sauteraud
CoverageTrack
RawReadsTrack
NucleosomeTrack
plotTracks