picsFDR {PICS}R Documentation

Estimate the FDR.

Description

Estimate the false detection rate for an object of class pics or picsList.

Usage

	picsFDR(picsIP,picsCont,filter=list(delta=c(0,Inf),se=c(0,Inf),sigmaSqF=c(0,Inf),sigmaSqR=c(0,Inf)))

Arguments

picsIP

An object of class pics or picsList containing the informations for the IP reads

.

picsCont

An object of class pics or picsList containing the informations for the control reads

.

filter

filter

A list of ranges for filtering regions based on PICS parameters. By default filter is set to 'NULL' and all regions are used.

delta

Length of the binding sites.

se

Standard error.

sigmaSqF

Forward peak variance

sigmaSqR

Reverse peak variance

Value

A 3 columns data.frame with the following columns: FDR, score, N.

Author(s)

Xuekui Zhang

See Also

picsList pics


[Package PICS version 2.30.0 Index]