QC {OSAT} | R Documentation |
Provide a visual summary of the sample placement per plates, and Chi-squre test of dependence between plates and other considered variables from sample.
QC(object, main = NULL, ...)
object |
An object of class |
main |
Mail title on the bar plot. |
... |
Additional plot parameters. |
library("OSAT") inPath <- system.file("extdata", package="OSAT") pheno <- read.table(file.path(inPath, 'samples.txt'), header=TRUE, sep="\t") ## create object to hold sample information gs <- setup.sample(pheno, optimal=c("SampleType", "Race", "AgeGrp"), strata=c("SampleType") ) ## create object that represents the used in the experiment gc <- setup.container(IlluminaBeadChip96Plate, 6, batch='plates') ## create an optimized setup. # demonstration only. nSim=5000 or more are commonly used. gSetup <- create.optimized.setup(sample=gs, container=gc, nSim=500) QC(gSetup)