mulOptPars {Mulcom} | R Documentation |
Function to optimize Mulcom parameter for maximim nuber of genes with a user defined FDR
mulOptPars(opt, ind, ths)
opt |
an MulCom optimization object |
ind |
index corresponding to the comparison |
ths |
a threshold for the FDR optimization, default is 0.05 |
mulOptPars
MulCom optimization function to identify best parameters
Claudio Isella, claudio.isella@ircc.it
data(benchVign) mulcom_perm <- mulPerm(Affy, Affy$Groups, 10, 7) #mulcom_opt <- mulOpt(mulcom_perm, seq(0.1, 0.5, 0.1), seq(1, 3, 0.1)) #optThs <- mulOptPars(mulcom_opt, 1, 0.05)