ped2geno {LEA} | R Documentation |
ped
to geno
formatA function that converts from the ped
format to the
geno
format.
ped2geno(input.file, output.file = NULL, force = TRUE)
input.file |
A character string containing a path to the input file,
a genotypic matrix in the |
output.file |
A character string containing a path to the output file,
a genotypic matrix in the |
force |
A boolean option. If FALSE, the input file is converted only if the output file does not exist. If TRUE, convert the file anyway. |
output.file |
A character string containing a path to the output file,
a genotypic matrix in the |
Eric Frichot
ped
geno
ancestrymap2lfmm
ancestrymap2geno
geno2lfmm
ped2lfmm
vcf2geno
lfmm2geno
# Creation of a file called "example.ped" # with 4 SNPs for 3 individuals. data("example_ped") write.table(example_ped,"example.ped", col.names = FALSE, row.names = FALSE, quote = FALSE) # Conversion from the ped format ("example.ped") # to the geno format ("example.geno"). # By default, the name of the output file is the same name # as the input file with a .geno extension. # Create file: "example.geno". output = ped2geno("example.ped") # Conversion from the ped format ("example.ped") # to the geno format with the output file called "plop.geno". # Create file: "plop.geno". output = ped2geno("example.ped", "plop.geno") # As force = false and the file "example.geno" already exists, # nothing happens. output = ped2geno("example.ped", force = FALSE)