GSEAGO_Builder {GmicR} | R Documentation |
GO enrichment for module names
GSEAGO_Builder( Auto_WGCNA_OUTPUT, species = "Homo sapiens", ontology = "BP", GO_conditional = FALSE, colname_correct = TRUE )
Auto_WGCNA_OUTPUT |
output from Auto_WGCNA function. |
species |
either 'Homo sapiens' (default) or 'Mus musculus'. |
ontology |
string either 'BP'(Biological Process; default), 'CC'(Cellular Component), or 'MF' (Molecular Function). |
GO_conditional |
A logical indicating whether the calculation should condition on the GO structure. will not be carried out. If TRUE, |
colname_correct |
a logical value. If TRUE (default), "." in gene names will be replaced with "-". This corrects a name change that is induced by R when creating a data.frame. If FALSE, no changes will be made. |
Lists with gene ontology enrichment analysis, performed using GOstats, for each module.
gene names must be official gene symbol