normalizeRPM {FourCSeq} | R Documentation |
normalizeRPM
Normalizes the counts of each experiment to RPM.
normalizeRPM(object, assay = "counts", normalized = "rpm", removeHighestValues = 0)
object |
A |
assay |
Character vector selecting the assay of the |
normalized |
Character vector specifying the assay name of the normalized data. |
removeHighestValues |
Defines the number of highest count values that should
be removed before the library sizes are calculated in the denominator.
|
Felix A. Klein, felix.klein@embl.de
data(fc, package="FourCSeq") fc <- combineFragEnds(fc) fc fc <- normalizeRPM(fc) fc