seqToGeneGroup {FindMyFriends} | R Documentation |
This method returns the group membership for each gene in the pangenome as a vector of indices. Element 1 corresponds to gene 1 and the value is the index of the corresponding gene group. If gene groups have yet to be defined it returns a vector of length 0.
seqToGeneGroup(object) ## S4 method for signature 'pgInMem' seqToGeneGroup(object)
object |
A pgVirtual subclass |
An integer vector with an element for each gene in the pangenome.
pgInMem
: Gene to genegroup indexing for pgInMem subclasses
Required for extending the class system of FindMyFriends
seqToOrg
for gene-to-organism relationship
testPG <- .loadPgExample(withGroups=TRUE) # Have a look at what the first six genes belongs to head(seqToGeneGroup(testPG))