queryGeneExpression {ENCODExplorer} | R Documentation |
ENCODE files are automatically split by biosample_description (which will separate samples from different cell fractions or sequencing methods) and by the treatment columns.
queryGeneExpression(biosample_name, assay = NULL, assembly = NULL, simplify = TRUE, use_interactive = FALSE)
biosample_name |
The cell-line/tissue for which average expression levels should be queried. |
assay |
The assay type to summarize. If |
assembly |
The target genomic assembly. If |
simplify |
If TRUE, non-discriminatory columns are removed from the metadata, and if only one sample group is found, it is renamed "All". |
use_interactive |
If TRUE, the user will be prompted to select prefered metadata values when multiple possibilities are available. available assembly is selected. |
An object of class ENCODEExpressionSummary.
buildExpressionSummary
,
queryTranscriptExpression
queryGeneExpression("bone marrow")