auc_multifunc {EGAD} | R Documentation |
The function calculates the AUC for a functional group analytically using an optimal ranked list of genes that indicates association between genes and groups.
auc_multifunc(annotations, optimallist)
annotations |
binary matrix indicating which list elements are in which functional groups. |
optimallist |
Ranked list (multifunctionality analysis, see |
aucs array of aucs for each group in annotations
annotations <- c(rep(0,10)) annotations[c(1,3,5)] <- 1 optimallist <- 10:1 aurocs_mf <- auc_multifunc(annotations, optimallist)