computeDrivers {DriverNet} | R Documentation |
Use a greedy algorithm to rank a list of driver mutations.
computeDrivers(patMutMatrix, patOutMatrix, influenceGraph, outputFolder = NULL, printToConsole = FALSE, weighted = FALSE)
patMutMatrix |
Patient Mutation Matrix |
patOutMatrix |
Patient Outlier Matrix |
influenceGraph |
Influence Graph Matrix |
outputFolder |
The folder to store the log. If set to NULL, no log files will be written. If set to "", the log will be written to the current folder. |
printToConsole |
If set to TRUE, progress and result of the function will be printed to the console. |
weighted |
Must be set to FALSE in this version. |
An object of DriverNetResult class that can be passed to the resultSummary
method.
Ali Bashashati, Reza Haffari, Jiarui Ding, Gavin Ha, Kenneth Liu, Jamie Rosner and Sohrab Shah
Maintainer: Jiarui Ding <jiaruid@cs.ubc.ca>
data(samplePatientMutationMatrix) data(samplePatientOutlierMatrix) data(sampleInfluenceGraph) driversList = computeDrivers(samplePatientMutationMatrix, samplePatientOutlierMatrix, sampleInfluenceGraph, outputFolder=NULL, printToConsole=FALSE) drivers(driversList)[1:10]