getPwmFromAlignmentFile {DiffLogo} | R Documentation |
generates a pwm from an alignment file
getPwmFromAlignmentFile(filename, alphabet = NULL)
filename |
the alignment file |
alphabet |
the desired alphabet of type Alphabet |
a pwm
fileName = "extdata/alignments/calamodulin_1.txt" file = system.file(fileName, package = "DiffLogo") pwm = getPwmFromAlignmentFile(file)