getPwmFromAlignmentFile {DiffLogo}R Documentation

generates a pwm from an alignment file

Description

generates a pwm from an alignment file

Usage

getPwmFromAlignmentFile(filename, alphabet = NULL)

Arguments

filename

the alignment file

alphabet

the desired alphabet of type Alphabet

Value

a pwm

Examples

fileName = "extdata/alignments/calamodulin_1.txt"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromAlignmentFile(file)

[Package DiffLogo version 2.10.0 Index]