EICparams {Autotuner} | R Documentation |
This function is designed to calculate the recommended parameters from EIC peaks. It is the main holder function for a lot of different ones involved in calculating EIC parameters.
EICparams(Autotuner, massThresh, useGap = TRUE, varExpThresh = 0.8, returnPpmPlots = TRUE, plotDir = ".", verbose = TRUE)
Autotuner |
An Autotuner objected containing sample specific raw data. |
massThresh |
A generous exact mass error threshold used to estimate PPM for features. |
useGap |
Parameter carried into checkEICPeaks that tells Autotuner whether to use the gap statustic to determine the proper number of clusters to use during ppm parameter estimation. |
varExpThresh |
Numeric value representing the variance explained threshold to use if useGap is false. |
returnPpmPlots |
A boolean value that tells R to return plots for ppm distributions. |
plotDir |
Path where to store plots. |
verbose |
Boolean value used to indicate whether checkEICPeaks function returns messages to the console. |
The function CheckEICPeaks handles all the peak specific computations.
A data.frame of all peak specific estimates.