.mm_dream |
DS analysis using mixed-models (MM) |
.mm_vst |
DS analysis using mixed-models (MM) |
aggregateData |
Aggregation of single-cell to pseudobulk data |
calcExprFreqs |
calcExprFreqs |
data |
Example datasets |
mmDS |
DS analysis using mixed-models (MM) |
pbDS |
pseudobulk DS analysis |
pbHeatmap |
Heatmap of cluster-sample pseudobulks |
pbMDS |
Pseudobulk-level MDS plot |
prepSCE |
Prepare SCE for DS analysis |
prepSim |
SCE preparation for 'simData' |
resDS |
resDS Formatting of DS analysis results |
sce |
Example datasets |
simData |
simData |