avg_probe_exp |
Function to produce a matrix containing the average expression of each gene probe within each sample cluster. |
cluster_analysis |
Function to perform Kmeans or Hierarchical clustering analysis of the selected gene probe expression data. |
input_file |
Function to read-in the gene expression file and assign gene probe names as the rownames. |
nor.min.max |
Function to normalize data to bring values into alignment. This function uses feature scaling to normalize values in a dataset between 0 and 1. |
number_clusters |
Function to determine the number of clusters to be used to cluster gene probes and samples. |
number_probes |
Function to determine the number of gene probes to select for in the gene feature selection process. |
probe_ranking |
Function to select for genes using one of the available gene probe ranking options. |
surv_analysis |
Function to produce Kaplan-Meier Survival Plots of selected gene expression data. |
WriteMatrixToFile |
Function to write a data matrix to a text file. |