Fingerprinting for Flow Cytometry


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Documentation for package ‘flowFP’ version 1.44.0

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flowFP-package Package overview
append-method Methods to append flowFP fingerprints to a flowFPPlex
append-methods Methods to append flowFP fingerprints to a flowFPPlex
binBoundary Return bin boundaries for a flowFPModel
binBoundary-method Return bin boundaries for a flowFPModel
binBoundary-methods Return bin boundaries for a flowFPModel
counts Method for getting fingerprint data.
counts-method Method for getting fingerprint data.
flowFP Fingerprint constructor
flowFP-class Fingerprint class description.
flowFPModel Fingerprint model constructor
flowFPModel-class Fingerprint model class description.
flowFPPlex Fingerprint collection constructor.
flowFPPlex-class Fingerprint collection class description.
fs1 Example FCS flowSet
fs2 Example FCS flowSet
hasClasses Returns TRUE if the flowFP has a class factor for its instances
hasClasses-method Returns TRUE if the flowFP has a class factor for its instances
hasClasses-methods Returns TRUE if the flowFP has a class factor for its instances
is.flowFP Test to see if object is a flowFP
is.flowFPModel Test to see if object is a flowFPModel
is.flowFPPlex Test to see if object is a flowFPPlex
length-method The number of fingerprints in a flowFPPlex
length-methods The number of fingerprints in a flowFPPlex
length<--method The number of fingerprints in a flowFPPlex
name Get Model Name
name-method Get Model Name
name-methods Get Model Name
nFeatures Returns the number of features in an object.
nFeatures-method Returns the number of features in an object.
nFeatures-methods Returns the number of features in an object.
nInstances Returns the number of instances in an object.
nInstances-method Returns the number of instances in an object.
nInstances-methods Returns the number of instances in an object.
nRecursions Methods to set or get nRecursions
nRecursions-method Methods to set or get nRecursions
nRecursions-methods Methods to set or get nRecursions
nRecursions<- Methods to set or get nRecursions
nRecursions<--method Methods to set or get nRecursions
parameters-method Return the parameters considered for fingerprinting
parameters-methods Return the parameters considered for fingerprinting
plate 96 well plate data.
plot-method Methods for visualizing flowFP objects
plot-methods Methods for visualizing flowFP objects
sampleClasses Gets/Sets the sample classes for a fingerprint.
sampleClasses-method Gets/Sets the sample classes for a fingerprint.
sampleClasses-methods Gets/Sets the sample classes for a fingerprint.
sampleClasses<- Gets/Sets the sample classes for a fingerprint.
sampleClasses<--method Gets/Sets the sample classes for a fingerprint.
sampleNames Methods to return sample names from a flowFP object.
sampleNames-method Methods to return sample names from a flowFP object.
sampleNames-methods Methods to return sample names from a flowFP object.
show-method Methods to view flowFP objects
show-methods Methods to view flowFP objects
summary-method Summerizes a flowFP object.
summary-methods Summerizes a flowFP object.
tags Returns tags from a flowFP object.
tags-method Returns tags from a flowFP object.
tags-methods Returns tags from a flowFP object.
[-method Indexing methods for flowFP and flowFPPlex
[-methods Indexing methods for flowFP and flowFPPlex
[[-method Indexing methods for flowFP and flowFPPlex
[[-methods Indexing methods for flowFP and flowFPPlex
[[<--method Indexing methods for flowFP and flowFPPlex