Cartesian plot and contingency test on 16S Microbial data


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Documentation for package ‘eudysbiome’ version 1.16.0

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eudysbiome-package eudysbiome.
assignTax Taxonomic Classification
Cartesian 2-D Cartesian plane Plots
contingencyCount Contingency Table Construction
contingencyTest Contingency test for count data
diffGenera Differential microbes in Genus-Species table A data frame containing 10 differential genera and the species included, which was to be annotated as '"harmful"' or '"harmless"'.
eudysbiome eudysbiome.
harmGenera Manually curated genera annotation table A data frame containing 260 genera annotated as "harmful" and the harmful species included in these genera.
microAnnotate Genus Annotation
microCount Microbial count contingency table
microDiff Differential annotated genera with abundance variations among pair-wise condition comparisons
tableSpecies Construct a Genus-Species Data Frame