Software for the integration of multi-omics experiments in Bioconductor


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Documentation for package ‘MultiAssayExperiment’ version 1.12.6

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$-method Accessing/modifying slot information
$<--method Accessing/modifying slot information
anyReplicated A group of helper functions for manipulating and cleaning a MultiAssayExperiment
anyReplicated-method A group of helper functions for manipulating and cleaning a MultiAssayExperiment
assay-method A container for multi-experiment data
assay-method An integrative multi-assay class for experiment data
assays-method A container for multi-experiment data
assays-method An integrative multi-assay class for experiment data
c-method An integrative multi-assay class for experiment data
coerce A container for multi-experiment data
coerce-method A container for multi-experiment data
coerce-method An integrative and matched-samples class for experiment data
colData-method Accessing/modifying slot information
colData<--method Accessing/modifying slot information
complete.cases-method A group of helper functions for manipulating and cleaning a MultiAssayExperiment
DataFrame Objects exported from other packages
dimnames-method A container for multi-experiment data
dimnames-method An integrative multi-assay class for experiment data
ExperimentList Construct an 'ExperimentList' object for the 'MultiAssayExperiment' object slot.
ExperimentList-class A container for multi-experiment data
experiments Accessing/modifying slot information
experiments-method Accessing/modifying slot information
experiments<- Accessing/modifying slot information
experiments<--method Accessing/modifying slot information
exportClass An integrative multi-assay class for experiment data
exportClass-method An integrative multi-assay class for experiment data
getWithColData A group of helper functions for manipulating and cleaning a MultiAssayExperiment
hasAssay Checking assay method for any class
hasRowRanges A group of helper functions for manipulating and cleaning a MultiAssayExperiment
hasRowRanges-method A group of helper functions for manipulating and cleaning a MultiAssayExperiment
intersectColumns A group of helper functions for manipulating and cleaning a MultiAssayExperiment
intersectRows A group of helper functions for manipulating and cleaning a MultiAssayExperiment
isEmpty-method A container for multi-experiment data
isEmpty-method A group of helper functions for manipulating and cleaning a MultiAssayExperiment
length-method An integrative multi-assay class for experiment data
listToMap Convert map from data.frame or DataFrame to list and vice versa
longFormat A group of helper functions for manipulating and cleaning a MultiAssayExperiment
mapToList Convert map from data.frame or DataFrame to list and vice versa
MatchedAssayExperiment An integrative and matched-samples class for experiment data
MatchedAssayExperiment-class An integrative and matched-samples class for experiment data
mergeReplicates A group of helper functions for manipulating and cleaning a MultiAssayExperiment
mergeReplicates-method A container for multi-experiment data
mergeReplicates-method A group of helper functions for manipulating and cleaning a MultiAssayExperiment
metadata-method Accessing/modifying slot information
metadata<--method Accessing/modifying slot information
miniACC Adrenocortical Carcinoma (ACC) MultiAssayExperiment
MultiAssayExperiment Construct a 'MultiAssayExperiment' object
MultiAssayExperiment-class An integrative multi-assay class for experiment data
MultiAssayExperiment-helpers A group of helper functions for manipulating and cleaning a MultiAssayExperiment
MultiAssayExperiment-methods Accessing/modifying slot information
names-method An integrative multi-assay class for experiment data
names<--method Accessing/modifying slot information
prepMultiAssay Prepare a 'MultiAssayExperiment' instance
reexports Objects exported from other packages
replicated A group of helper functions for manipulating and cleaning a MultiAssayExperiment
replicated-method A group of helper functions for manipulating and cleaning a MultiAssayExperiment
sampleMap Accessing/modifying slot information
sampleMap-method Accessing/modifying slot information
sampleMap<- Accessing/modifying slot information
sampleMap<--method Accessing/modifying slot information
show-method A container for multi-experiment data
show-method An integrative multi-assay class for experiment data
subset Subsetting a MultiAssayExperiment object
subsetBy Subsetting a MultiAssayExperiment object
subsetByAssay Subsetting a MultiAssayExperiment object
subsetByAssay-method Subsetting a MultiAssayExperiment object
subsetByColData Subsetting a MultiAssayExperiment object
subsetByColData-method Subsetting a MultiAssayExperiment object
subsetByColumn Subsetting a MultiAssayExperiment object
subsetByColumn-method Subsetting a MultiAssayExperiment object
subsetByRow Subsetting a MultiAssayExperiment object
subsetByRow-method Subsetting a MultiAssayExperiment object
updateObject-method An integrative multi-assay class for experiment data
upsetSamples Create a generalized Venn Diagram analog for sample membership in multiple assays, using the upset algorithm in 'UpSetR'
wideFormat A group of helper functions for manipulating and cleaning a MultiAssayExperiment
[-method Subsetting a MultiAssayExperiment object
[<--method Subsetting a MultiAssayExperiment object
[[-method Subsetting a MultiAssayExperiment object
[[<--method Subsetting a MultiAssayExperiment object