hiv                     Microarray intensity expression levels for HIV
                        type 1 infection of CD4+ T-Cell lines
like                    Microarray intensity expression levels for
                        like-like data
neg.contr               Indicator of known truly non differentially
                        expressed genes in the hiv dataset
norm1a                  Function for normalizing the mean of single
                        replicate log ratios
norm1b                  Function for normalizing the mean and variance
                        (or just the variance) of single replicate log
                        ratios
norm1c                  Function for normalizing the mean of
                        average-across-replicates log ratios
norm1d                  Function for normalizing the mean and variance
                        of average-across-replicates log ratios
norm2c                  Function for normalizing the mean of
                        average-across-replicates log ratio differences
norm2d                  Function for normalizing the mean and variance
                        of average-across-replicates log ratio
                        differences
nudge1                  Function for normalizing data, fitting a
                        normal-uniform mixture and estimating
                        probabilities of differential expression in the
                        case where the two samples are being compared
                        directly
nudge2                  Function for normalizing data, fitting a
                        normal-uniform mixture and estimating
                        probabilities of differential expression in the
                        case where the two samples are being compared
                        indirectly through a common reference sample
pos.contr               Indicator of known truly differentially
                        expressed genes in the hiv dataset
