Transcriptional Regulatory Inference from Genetics of Gene ExpRession


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Documentation for package ‘trigger’ version 1.14.0

Help Pages

Multiple-locus linkage Multi-Locus Linkage (Epistasis) Analysis
plot Graphical Display of Trigger Analysis
plot-method Graphical Display of Trigger Analysis
trigger-class A class to store and analyze data for Transcriptional Regulation Inference from Genetics of Gene ExpRession
trigger.build Format the input data and create an Trigger object
trigger.eigenR2 Estimate the proportion of genome-wide variation explained by each eQTL
trigger.eigenR2-method Estimate the proportion of genome-wide variation explained by each eQTL
trigger.export2cross Export Trigger data to R/qtl's cross class object
trigger.export2cross-method Export Trigger data to R/qtl's cross class object
trigger.link Genomewide eQTL analysis
trigger.link-method Genomewide eQTL analysis
trigger.loclink Estimate local-linkage probability for each gene
trigger.loclink-method Estimate local-linkage probability for each gene
trigger.mlink Multi-Locus Linkage (Epistasis) Analysis
trigger.mlink-method Multi-Locus Linkage (Epistasis) Analysis
trigger.net Network-Trigger analysis
trigger.net-method Network-Trigger analysis
trigger.netPlot2ps Write the network from a trigger probability matrix to a postscript file
trigger.netPlot2ps-method Write the network from a trigger probability matrix to a postscript file
trigger.trait Trait-trigger analysis
trigger.trait-method Trait-trigger analysis
yeast A yeast data set for Transcriptional Regulation Inference from Genetics of Gene ExpRession