Multiple-locus linkage | Multi-Locus Linkage (Epistasis) Analysis |
plot | Graphical Display of Trigger Analysis |
plot-method | Graphical Display of Trigger Analysis |
trigger-class | A class to store and analyze data for Transcriptional Regulation Inference from Genetics of Gene ExpRession |
trigger.build | Format the input data and create an Trigger object |
trigger.eigenR2 | Estimate the proportion of genome-wide variation explained by each eQTL |
trigger.eigenR2-method | Estimate the proportion of genome-wide variation explained by each eQTL |
trigger.export2cross | Export Trigger data to R/qtl's cross class object |
trigger.export2cross-method | Export Trigger data to R/qtl's cross class object |
trigger.link | Genomewide eQTL analysis |
trigger.link-method | Genomewide eQTL analysis |
trigger.loclink | Estimate local-linkage probability for each gene |
trigger.loclink-method | Estimate local-linkage probability for each gene |
trigger.mlink | Multi-Locus Linkage (Epistasis) Analysis |
trigger.mlink-method | Multi-Locus Linkage (Epistasis) Analysis |
trigger.net | Network-Trigger analysis |
trigger.net-method | Network-Trigger analysis |
trigger.netPlot2ps | Write the network from a trigger probability matrix to a postscript file |
trigger.netPlot2ps-method | Write the network from a trigger probability matrix to a postscript file |
trigger.trait | Trait-trigger analysis |
trigger.trait-method | Trait-trigger analysis |
yeast | A yeast data set for Transcriptional Regulation Inference from Genetics of Gene ExpRession |