Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool


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Documentation for package ‘spikeLI’ version 2.28.0

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spikeLI-package Analysis of Affymetrix spike-in data (HGU95 and HGU133 Latin square) using the Langmuir Isotherm.
collapse Data collapse of all concentrations into a single graph
conc133 Concentration 95
conc95 Concentration 95
hgu Selected Probe Set data
Ivsc Plot of intensity vs. concentration for given probes
IvsDG Plot Intensity as function of the affinity for a given probe set at fixed concentration.
spikeLI Analysis of Affymetrix spike-in data (HGU95 and HGU133 Latin square) using the Langmuir Isotherm.
SPIKE_IN Spike-in Probe-Set Names
SPIKE_IN95 set of spike-in genes contained in the HGU95 dataset
SPIKE_INA Artificial Spike-in probesets
SPIKE_INB Bacteria Spike-in probeset names
SPIKE_INH Human Spike-in probe-set names