ExpressionMatrix | Single-cell expression data for genes differentially expressed in differentiating human skeletal muscle myoblasts cells |
f_distance2vector | Conversion of the lower triangular matrix of a distance matrix into an array |
geneset.list | Example of a geneset collection |
knnalgorithm | Auxiliary function for KNN and IMC algorithms |
pseudoreplicatesbymodel | Auxiliary function of sc_InSilicoCellsReplicatesObj function used when its parameter method="lognormal-3parameters" |
pseudoreplicatesbynoise | Auxiliary function of sc_InSilicoCellsReplicatesObj function used when its parameter method="variance.deciles" |
pseudoreplicatesbynoise_cv2 | Auxiliary function of sc_InSilicoCellsReplicatesObj function used when its parameter method="cv2.deciles" |
sc_AssociationOfCellsHierarchyWithAGeneSet | Association of a cell-state hierarchy with a functional gene set |
sc_clusterObj | Clustering of individual cells based on a metric of choice |
sc_ComparissonOfGraphs | Comparisson of graphs |
sc_DimensionalityReductionObj | Dimensionality reduction of an expression matrix |
sc_distanceObj | Assessment of a cell-to-cell distance matrix with a metric of choice |
sc_GraphBuilderObj | Graph building function for assessment of cell-state hierarchies |
sc_InitializingSincellObject | Function to initialize a sincell object |
sc_InSilicoCellsReplicatesObj | In silico generation of replicates of individual cells |
sc_marker2color | Palette of colors from the expression values of a marker gene |
sc_StatisticalSupportByGeneSubsampling | Statistical support of cell-state hierarchies by gene subsampling |
sc_StatisticalSupportByReplacementWithInSilicoCellsReplicates | Statistical support of cell-state hierarchies by random cell substitution with in silico-generated cell replicate |
sstalgorithm | Auxiliary function for SST algorithm within function sc_GraphBuilderObj() |