exampleSet |
sample data, a subset of the C-MAP |
GeneExpressionSignature |
Introduction to the GeneExpressionSignature Package |
getRLs |
Convert gene expression profiles to a ranked list (data preprocessing) |
RankMerging |
Merging the ranker lists with the same labels of the biological states into a single list with the Iorio's method. |
ScoreGSEA |
Compute pairwise distances between samples with method in package GSEA |
ScorePGSEA |
Compute pairwise distances between samples with method in package PGSEA |
SignatureDistance |
Compute pairwise distances comprehensively. |