GSCA-package |
GSCA: Gene Set Context Analysis |
annotatePeaks |
Annotate ChIPx peaks with genes by Entrez GeneIDs |
ConstructTG |
Construct target genes for a TF using TF-bound genes and differentially expressed genes from ChIP-chip or ChIP-seq and TF perturbation gene expression data. |
geneIDdata |
Homologene data |
GSCA |
GSCA |
GSCAeda |
GSCA follow-up exploratory data analysis |
GSCAplot |
Visualize GSCA output |
GSCAui |
Launch GSCA interactive User Interface |
Oct4ESC_TG |
Oct4 activated (+) and repressed (-) target genes in embryonic stem cells |
STAT1_TG |
STAT1 activated (+) target genes defined from experimental ChIP-seq data and literature survey. |
tabSearch |
Searches through GPL96, GPL1261, GPL570 or GPL571 compendium data for biological contexts of interest. |