CorMut-package	CorMut-package
biCkaksAA	biCkaksCodon-class
biCkaksAA-class	biCkaksCodon-class
biCkaksCodon	biCkaksCodon-class
biCkaksCodon-class	biCkaksCodon-class
biCompare	biCompare-methods
biCompare,biCkaksAA-method	biCompare-methods
biCompare,biCkaksCodon-method	biCompare-methods
biCompare,biJIAA-method	biCompare-methods
biCompare,biMIAA-method	biCompare-methods
biCompare,biMICodon-method	biCompare-methods
biCompare-class	biCompare-class
biCompare-methods	biCompare-methods
biCompare.biCkaksAA	biCompare-methods
biCompare.biCkaksCodon	biCompare-methods
biCompare.biJIAA	biCompare-methods
biCompare.biMIAA	biCompare-methods
biCompare.biMICodon	biCompare-methods
biJIAA	biCkaksCodon-class
biJIAA-class	biCkaksCodon-class
biMIAA	biCkaksCodon-class
biMIAA-class	biCkaksCodon-class
biMICodon	biCkaksCodon-class
biMICodon-class	biCkaksCodon-class
ckaks	ckaks-class
ckaks-class	ckaks-class
ckaks.CorMut	ckaks-class
ckaks.CorMut,ckaks-method	ckaks-class
ckaksAA	ckaksAA
ckaksCodon	ckaksCodon
CorMut	CorMut-package
filterSites	filterSites-methods
filterSites,ckaks-method	filterSites-methods
filterSites,JI-method	filterSites-methods
filterSites,kaksAA-method	filterSites-methods
filterSites,kaksCodon-method	filterSites-methods
filterSites,MI-method	filterSites-methods
filterSites-methods	filterSites-methods
filterSites.ckaks	filterSites-methods
filterSites.JI	filterSites-methods
filterSites.kaksAA	filterSites-methods
filterSites.kaksCodon	filterSites-methods
filterSites.MI	filterSites-methods
JI-class	JI-class
ji.CorMut,JI-method	JI-class
jiAA	jiAA
ka.CorMut	kaksAA-class
ka.CorMut,kaksAA-method	kaksAA-class
ka.CorMut,kaksCodon-method	kaksCodon-class
kaks.CorMut	kaksAA-class
kaks.CorMut,kaksAA-method	kaksAA-class
kaks.CorMut,kaksCodon-method	kaksCodon-class
kaksAA	kaksAA
kaksAA-class	kaksAA-class
kaksCodon	kaksCodon
kaksCodon-class	kaksCodon-class
ks.CorMut	kaksAA-class
ks.CorMut,kaksAA-method	kaksAA-class
ks.CorMut,kaksCodon-method	kaksCodon-class
lod.CorMut	ckaks-class
lod.CorMut,ckaks-method	ckaks-class
lod.CorMut,kaksAA-method	kaksAA-class
lod.CorMut,kaksCodon-method	kaksCodon-class
method.CorMut	biCompare-class
method.CorMut,biCompare-method	biCompare-class
MI-class	MI-class
mi.CorMut	MI-class
mi.CorMut,MI-method	MI-class
miAA	miAA
miCodon	miCodon
p.value.CorMut	MI-class
p.value.CorMut,JI-method	JI-class
p.value.CorMut,MI-method	MI-class
plot	plot-methods
plot,biCompare-method	plot-methods
plot,ckaks-method	plot-methods
plot,JI-method	plot-methods
plot,MI-method	plot-methods
plot.biCompare	plot-methods
plot.ckaks	plot-methods
plot.JI	plot-methods
plot.MI	plot-methods
positiveSite01.CorMut	biCompare-class
positiveSite01.CorMut,biCompare-method	biCompare-class
positiveSite02.CorMut	biCompare-class
positiveSite02.CorMut,biCompare-method	biCompare-class
q.CorMut	kaksAA-class
q.CorMut,kaksAA-method	kaksAA-class
q.CorMut,kaksCodon-method	kaksCodon-class
seqFormat	seqFormat-methods
seqFormat-methods	seqFormat-methods
seq_num.CorMut	kaksAA-class
seq_num.CorMut,kaksAA-method	kaksAA-class
seq_num.CorMut,kaksCodon-method	kaksCodon-class
show,biCkaksAA-method	biCkaksCodon-class
show,biCkaksCodon-method	biCkaksCodon-class
show,biMIAA-method	biCkaksCodon-class
show,biMICodon-method	biCkaksCodon-class
show,ckaks-method	ckaks-class
show,JI-method	JI-class
show,kaksAA-method	kaksAA-class
show,kaksCodon-method	kaksCodon-class
show,MI-method	MI-class
state_1.CorMut	biCompare-class
state_1.CorMut,biCompare-method	biCompare-class
state_2.CorMut	biCompare-class
state_2.CorMut,biCompare-method	biCompare-class
statistic_1.CorMut	biCompare-class
statistic_1.CorMut,biCompare-method	biCompare-class
statistic_2.CorMut	biCompare-class
statistic_2.CorMut,biCompare-method	biCompare-class
