R package for calling CNV from Illumina 450k methylation microarrays


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Documentation for package ‘CopyNumber450k’ version 1.4.0

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CNV450kSet CNV450kSet instances
CNV450kSet-class CNV450kSet instances
computeSignificance CNV450kSet instances
computeSignificance-method CNV450kSet instances
CopyNumber450k CNV450kSet instances
dropSNPprobes CNV450kSet instances
dropSNPprobes-method CNV450kSet instances
findCNV CNV450kSet instances
findCNV-method CNV450kSet instances
getManifest CNV450kSet instances
getManifest-method CNV450kSet instances
getSegments CNV450kSet instances
getSegments-method CNV450kSet instances
getSummary CNV450kSet instances
getSummary-method CNV450kSet instances
intersectCNV CNV450kSet instances
intersectCNV-method CNV450kSet instances
normalize CNV450kSet instances
normalize-method CNV450kSet instances
plotDensity CNV450kSet instances
plotDensity-method CNV450kSet instances
plotPCA CNV450kSet instances
plotPCA-method CNV450kSet instances
plotSample CNV450kSet instances
plotSample-method CNV450kSet instances
segmentize CNV450kSet instances
segmentize-method CNV450kSet instances
subgroupDifference CNV450kSet instances
subgroupDifference-method CNV450kSet instances
write.csv-method CNV450kSet instances