LowMACA-package | LowMACA : Low frequency Mutations Analysis via Consensus Alignment |
alignSequences | Align sequences via clustalo |
alignSequences-method | Class '"LowMACA"' |
bpAll | Draw a mutation barplot |
bpAll-method | Class '"LowMACA"' |
entropy | Calculate LowMACA statistics |
entropy-method | Class '"LowMACA"' |
getMutations | Retrieve mutation data for a LowMACA object |
getMutations-method | Class '"LowMACA"' |
lfm | Show significant clusters of mutations |
lfm-method | Class '"LowMACA"' |
lmAlignment | Show Alignment Results from a LowMACA object |
lmAlignment-method | Class '"LowMACA"' |
lmEntropy | Show Entropy Information Contained in a LowMACA object |
lmEntropy-method | Class '"LowMACA"' |
lmMutations | Show Mutation Data Contained in a LowMACA object |
lmMutations-method | Class '"LowMACA"' |
lmObj | Example of a LowMACA object |
lmParams | Show and set parameters |
lmParams-method | Class '"LowMACA"' |
lmParams<- | Show and set parameters |
lmParams<--method | Class '"LowMACA"' |
lmPlot | Draw a comprehensive LowMACA plot |
lmPlot-method | Class '"LowMACA"' |
LowMACA | LowMACA : Low frequency Mutations Analysis via Consensus Alignment |
LowMACA-class | Class '"LowMACA"' |
mapMutations | Map mutations on consensus sequence |
mapMutations-method | Class '"LowMACA"' |
newLowMACA | Construct a LowMACA object |
nullProfile | Draw a mutational profile plot |
nullProfile-method | Class '"LowMACA"' |
parallelize | Show and set parallelization options |
parallelize-method | Class '"LowMACA"' |
parallelize<- | Show and set parallelization options |
parallelize<--method | Class '"LowMACA"' |
protter | Draw a Protter plot |
protter-method | Class '"LowMACA"' |
setup | Setup of a LowMACA object |
setup-method | Class '"LowMACA"' |
show-method | Class '"LowMACA"' |
showTumorType | List of tumor types |