ALDEx2m-package | Analysis of differential abundance taking sample variation into account |
aldex | Compute an 'aldex' Object |
aldex.clr | Compute an 'aldex.clr' Object |
aldex.clr-class | The aldex.clr class |
aldex.clr-method | Compute an 'aldex.clr' Object |
aldex.clr.function | Compute an 'aldex.clr' Object |
aldex.corr | calculate Pearson's Product moment and Spearman's rank correlations |
aldex.effect | calculate effect sizes and differences between conditions |
aldex.glm | calculate glm and Kruskal Wallis test statistics |
aldex.plot | Plot an 'aldex' Object |
aldex.ttest | calculate Welch's t-test and Wilcoxon test statistics |
ALDEx2m | Analysis of differential abundance taking sample variation into account |
getFeatureNames | getFeatureNames |
getFeatureNames-method | getFeatureNames |
getFeatures | getFeatures |
getFeatures-method | getFeatures |
getMonteCarloInstances | getMonteCarloInstances |
getMonteCarloInstances-method | getMonteCarloInstances |
getMonteCarloReplicate | getMonteCarloReplicate |
getMonteCarloReplicate-method | getMonteCarloReplicate |
getReads | getReads |
getReads-method | getReads |
getSampleIDs | getSampleIDs |
getSampleIDs-method | getSampleIDs |
numConditions | numConditions |
numConditions-method | numConditions |
numFeatures | numFeatures |
numFeatures-method | numFeatures |
numMCInstances | numMCInstances |
numMCInstances-method | numMCInstances |
selex | Selection-based differential sequence variant abundance dataset |