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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ChIPXpressData")
In most cases, you don't need to download the package archive at all.
ChIPXpressData
ChIPXpress Pre-built Databases
Bioconductor version: 3.0
Contains pre-built mouse (GPL1261) and human (GPL570) database of gene expression profiles to be used for ChIPXpress ranking.
Author: George Wu
Maintainer: George Wu <gewu at jhsph.edu>
Citation (from within R,
enter citation("ChIPXpressData")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ChIPXpressData")
Documentation
| Reference Manual |
Details
| biocViews | AffymetrixChIP, ExperimentData, Homo_sapiens, Mus_musculus |
| Version | 1.3.2 |
| License | GPL (>=2) |
| Depends | bigmemory |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | ChIPXpress |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ChIPXpressData_1.3.2.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | ChIPXpressData_1.3.2.tgz |
| Mac OS X 10.9 (Mavericks) | ChIPXpressData_1.3.2.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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