- Home
- Bioconductor 3.0
- Annotation Packages
- PANTHER.db
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("PANTHER.db")
In most cases, you don't need to download the package archive at all.
PANTHER.db
A set of annotation maps describing the entire PANTHER Gene Ontology
Bioconductor version: 3.0
A set of annotation maps describing the entire Gene Ontology assembled using data from PANTHER
Author: Julius Muller
Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>
Citation (from within R,
enter citation("PANTHER.db")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("PANTHER.db")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PANTHER.db")
| R Script | PANTHER.db: An annotation package to access the PANTHER Classification System | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, AnnotationData, Infrastructure |
| Version | 1.0.1 |
| License | Artistic-2.0 |
| Depends | AnnotationDbi, utils, methods, RSQLite |
| Imports | |
| LinkingTo | |
| Suggests | RUnit, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | PANTHER.db_1.0.1.tar.gz |
| Windows Binary | PANTHER.db_1.0.1.zip |
| Mac OS X 10.6 (Snow Leopard) | PANTHER.db_1.0.1.tgz |
| Mac OS X 10.9 (Mavericks) | PANTHER.db_1.0.1.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2015, Bioconductor
