To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("DO.db")
In most cases, you don't need to download the package archive at all.
DO.db
A set of annotation maps describing the entire Disease Ontology
Bioconductor version: 3.0
A set of annotation maps describing the entire Disease Ontology assembled using data from DO
Author: Jiang Li
Maintainer: Jiang Li <riverlee2008 at gmail.com>
Citation (from within R,
enter citation("DO.db")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("DO.db")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DO.db")
| R Script | DO.db Overview | |
| Reference Manual |
Details
| biocViews | AnnotationData, FunctionalAnnotation |
| Version | 2.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.7.0), methods, AnnotationDbi(>= 1.9.7) |
| Imports | methods, AnnotationDbi |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | DOSE |
| Suggests Me | gwascat |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DO.db_2.8.0.tar.gz |
| Windows Binary | DO.db_2.8.0.zip |
| Mac OS X 10.6 (Snow Leopard) | DO.db_2.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | DO.db_2.8.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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