- Home
- Bioconductor 3.0
- Software Packages
- siggenes
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("siggenes")
In most cases, you don't need to download the package archive at all.
siggenes
Multiple testing using SAM and Efron's empirical Bayes approaches
Bioconductor version: 3.0
Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).
Author: Holger Schwender
Maintainer: Holger Schwender <holger.schw at gmx.de>
Citation (from within R,
enter citation("siggenes")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("siggenes")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("siggenes")
| R Script | siggenes Manual | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier |
| License | LGPL (>= 2) |
| Depends | methods, Biobase, multtest, splines, graphics |
| Imports | stats4 |
| LinkingTo | |
| Suggests | affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5) |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | KCsmart, oneChannelGUI |
| Imports Me | charm, DeSousa2013, GeneSelector, minfi |
| Suggests Me | GeneSelector, logicFS, trio, XDE |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | siggenes_1.40.0.tar.gz |
| Windows Binary | siggenes_1.40.0.zip |
| Mac OS X 10.6 (Snow Leopard) | siggenes_1.40.0.tgz |
| Mac OS X 10.9 (Mavericks) | siggenes_1.40.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2015, Bioconductor
