To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("shinyMethyl")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 3.0
Interactive tool for visualizing Illumina's 450k array data
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>
Citation (from within R,
enter citation("shinyMethyl")):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("shinyMethyl")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyMethyl")
| R Script | shinyMethyl: interactive visualization of Illumina 450K methylation arrays | |
| Reference Manual | ||
| Text | NEWS |
| biocViews | DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.0 (R-3.1) |
| License | Artistic-2.0 |
| Depends | methods, BiocGenerics(>= 0.3.2), shiny (>= 0.9.1), minfi(>= 1.6.0), IlluminaHumanMethylation450kmanifest, matrixStats, R (>= 3.0.0) |
| Imports | RColorBrewer |
| LinkingTo | |
| Suggests | shinyMethylData, minfiData, BiocStyle, RUnit, digest, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Follow Installation instructions to use this package in your R session.
| Package Source | shinyMethyl_1.0.2.tar.gz |
| Windows Binary | shinyMethyl_1.0.2.zip |
| Mac OS X 10.6 (Snow Leopard) | shinyMethyl_1.0.2.tgz |
| Mac OS X 10.9 (Mavericks) | shinyMethyl_1.0.2.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
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