To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("openCyto")

In most cases, you don't need to download the package archive at all.

openCyto

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: 3.0

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("openCyto")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("openCyto")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("openCyto")

HTML	R Script	An Introduction to the openCyto package
HTML	R Script	How to write a csv gating template
PDF		Reference Manual
Text		NEWS

biocViews	DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version	1.4.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends	flowWorkspace(>= 3.11.10)
Imports	methods, Biobase, gtools, flowCore, flowViz, ncdfFlow(>= 2.11.34), flowStats(>= 3.23.7), flowClust, MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
LinkingTo	Rcpp
Suggests	flowWorkspaceData, knitr, testthat, utils, tools, parallel
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	flowCore
Build Report

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