To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ampliQueso")

In most cases, you don't need to download the package archive at all.

ampliQueso

Analysis of amplicon enrichment panels

Bioconductor version: 3.0

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

Author: Alicja Szabelska <alicja.szabelska at up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka at gmail.com>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Citation (from within R, enter citation("ampliQueso")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ampliQueso")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ampliQueso")

PDF	R Script	ampliQueso primer
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization
Version	1.4.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-2
Depends	R (>= 2.15.0), rnaSeqMap(>= 2.17.1), knitr, rgl, ggplot2, gplots, parallel, doParallel, foreach, VariantAnnotation, genefilter, statmod, xtable
Imports	edgeR, DESeq, samr
LinkingTo
Suggests
SystemRequirements
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URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ampliQueso_1.4.0.tar.gz
Windows Binary	ampliQueso_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)	ampliQueso_1.4.0.tgz
Mac OS X 10.9 (Mavericks)	ampliQueso_1.4.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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