To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rqc")

In most cases, you don't need to download the package archive at all.

Rqc

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: 3.0

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("Rqc")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rqc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rqc")

HTML	R Script	Rqc - Quality Control Tool for High-Throughput Sequencing Data
PDF		Reference Manual
Text		NEWS

Details

biocViews	QualityControl, Sequencing, Software
Version	1.0.4
In Bioconductor since	BioC 3.0 (R-3.1)
License	GPL (>= 2)
Depends	BiocParallel, ShortRead, ggplot2
Imports	BiocGenerics, Biostrings, IRanges, methods, reshape2, S4Vectors, knitr (>= 1.7), BiocStyle
LinkingTo
Suggests	rmarkdown
SystemRequirements
Enhances
URL	https://github.com/labbcb/Rqc
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Rqc_1.0.4.tar.gz
Windows Binary	Rqc_1.0.4.zip
Mac OS X 10.6 (Snow Leopard)	Rqc_1.0.4.tgz
Mac OS X 10.9 (Mavericks)	Rqc_1.0.4.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center