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MSstats

Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Bioconductor version: 3.0

A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.

Author: Meena Choi <choi67 at purdue.edu>, Ching-Yun Chang <chang54 at purdue.edu>, Olga Vitek <ovitek at purdue.edu>

Maintainer: Meena Choi <choi67 at purdue.edu>

Citation (from within R, enter citation("MSstats")):

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source("http://bioconductor.org/biocLite.R")
biocLite("MSstats")

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PDF	R Script	Protein quantification in LC-MS, SRM, DIA experiments
PDF		Reference Manual
Text		NEWS

biocViews	MassSpectrometry, Proteomics, Software
Version	2.4.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends	R (>= 3.0), Rcpp, MSnbase, reshape
Imports	lme4, marray, limma, gplots, ggplot2, preprocessCore
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