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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("BiocInstaller")
In most cases, you don't need to download the package archive at all.
BiocInstaller
Install/Update Bioconductor and CRAN Packages
Bioconductor version: 3.0
Installs/updates Bioconductor and CRAN packages
Author: Dan Tenenbaum and Biocore Team
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("BiocInstaller")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("BiocInstaller")
Documentation
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software |
| Version | 1.16.5 |
| In Bioconductor since | BioC 2.9 (R-2.14) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1.0) |
| Imports | |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | affy, affylmGUI, AnnotationHub, BiocCheck, gcrma, oligoClasses, QuasR, RforProteomics, webbioc |
| Suggests Me | BSgenome, GOSemSim, metaseqR, pkgDepTools, RNAseqData.HNRNPC.bam.chr14 |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | BiocInstaller_1.16.5.tar.gz |
| Windows Binary | BiocInstaller_1.16.5.zip |
| Mac OS X 10.6 (Snow Leopard) | BiocInstaller_1.16.5.tgz |
| Mac OS X 10.9 (Mavericks) | BiocInstaller_1.16.5.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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