Analysis of methylation array data


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Documentation for package ‘missMethyl’ version 1.0.0

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missMethyl-package Introduction to the missMethyl package
contrasts.varFit Compute contrasts for a varFit object.
densityByProbeType Plot the beta value distributions of the Infinium I and II probe types relative to the overall beta value distribution.
getLeveneResiduals Obtain Levene residuals
missMethyl Introduction to the missMethyl package
SWAN Subset-quantile Within Array Normalisation for Illumina Infinium HumanMethylation450 BeadChips
SWAN.default Subset-quantile Within Array Normalisation for Illumina Infinium HumanMethylation450 BeadChips
SWAN.MethyLumiSet Subset-quantile Within Array Normalisation for Illumina Infinium HumanMethylation450 BeadChips
SWAN.RGChannelSet Subset-quantile Within Array Normalisation for Illumina Infinium HumanMethylation450 BeadChips
topVar Table of top-ranked differentially variable CpGs
varFit Testing for differential variability
varFit.default Testing for differential variability
varFit.DGEList Testing for differential variability
varFit.MethylSet Testing for differential variability