activeAgainst | Show compounds active against a specified target |
activeTargets | Show targets against which a small molecule is active |
activityMatrix | Output a matrix of compound bioactivity |
addBioassayIndex | Index a bioassayR database |
addDataSource | Add a new data source to a bioassayR database |
aid | Class '"bioassay"' |
aid-method | Class '"bioassay"' |
aid<- | Class '"bioassay"' |
aid<--method | Class '"bioassay"' |
assay_type | Class '"bioassay"' |
assay_type-method | Class '"bioassay"' |
assay_type<- | Class '"bioassay"' |
assay_type<--method | Class '"bioassay"' |
bioassay | Class '"bioassay"' |
bioassay-class | Class '"bioassay"' |
BioassayDB-class | Class '"BioassayDB"' |
bioassaySet-class | Class '"bioassaySet"' |
connectBioassayDB | Create a 'BioassayDB' object connected to the specified database file |
disconnectBioassayDB | Disconnect the database file from a 'BioassayDB' object |
dropBioassay | Delete an assay from a bioassayR database |
dropBioassayIndex | Remove index from a bioassayR database |
getAssay | Retrieve a bioassay |
getAssays | Retrieve multiple bioassays from a database |
getBioassaySetByCids | Create 'bioassaySet' sparse matrix object with activity data only for specified compounds |
loadBioassay | Add an assay to the database |
newBioassayDB | Create a new bioassayR database |
organism | Class '"bioassay"' |
organism-method | Class '"bioassay"' |
organism<- | Class '"bioassay"' |
organism<--method | Class '"bioassay"' |
parsePubChemBioassay | Parse PubChem Bioassay Data |
perTargetMatrix | Collapse a 'bioassaySet' object from multiple assays by combining assays with a common target |
queryBioassayDB | Perform a SQL query on a bioassayR database |
queryBioassayDB-method | Class '"BioassayDB"' |
samplebioassay | Sample activity data for use with bioassayR |
scores | Class '"bioassay"' |
scores-method | Class '"bioassay"' |
scores<- | Class '"bioassay"' |
scores<--method | Class '"bioassay"' |
scoring | Class '"bioassay"' |
scoring-method | Class '"bioassay"' |
scoring<- | Class '"bioassay"' |
scoring<--method | Class '"bioassay"' |
selectiveAgainst | Identify small molecules with selective binding against a target of interest |
show | Class '"bioassay"' |
show-method | Class '"BioassayDB"' |
show-method | Class '"bioassay"' |
show-method | Class '"bioassaySet"' |
source_id | Class '"bioassay"' |
source_id-method | Class '"bioassay"' |
source_id<- | Class '"bioassay"' |
source_id<--method | Class '"bioassay"' |
targets | Class '"bioassay"' |
targets-method | Class '"bioassay"' |
targets<- | Class '"bioassay"' |
targets<--method | Class '"bioassay"' |
target_types | Class '"bioassay"' |
target_types-method | Class '"bioassay"' |
target_types<- | Class '"bioassay"' |
target_types<--method | Class '"bioassay"' |