STATegRa-package | STATegRa |
bioDist | bioDist |
bioDist-method | bioDist |
bioDistclass | bioDistclass |
bioDistclass-class | bioDistclass |
bioDistclass-constructor | bioDistclass |
bioDistFeature | bioDistFeature |
bioDistFeature-method | bioDistFeature |
bioDistFeaturePlot | bioDistFeaturePlot |
bioDistW | bioDistW |
bioDistW-method | bioDistW |
bioDistWPlot | bioDistWPlot |
bioDistWPlot-method | bioDistWPlot |
bioMap | bioMap constructor |
bioMap-class | bioMap class |
bioMap-constructor | bioMap constructor |
biplotRes | Biplot results of Components Analysis |
biplotRes-method | Biplot results of Components Analysis |
Block1 | STATegRa_initial_data |
Block1.PCA | STATegRa_initial_data |
Block2 | STATegRa_initial_data |
Block2.PCA | STATegRa_initial_data |
caClass-class | caClass |
class:bioDistclass | bioDistclass |
class:bioMap | bioMap class |
class:caClass | caClass |
createOmicsExpressionSet | Create an ExpressionSet object since omics dataset. |
createOmicsExpressionSet-method | Create an ExpressionSet object since omics dataset. |
ed | STATegRa_initial_data |
ed.PCA | STATegRa_initial_data |
getInitialData | Retrieve Initial data from caClass objects |
getInitialData-method | Retrieve Initial data from caClass objects |
getLoadings | Retrieve information about the loadings obtained using 'omicsCompAnalysis' from an 'caClass-class' |
getLoadings-method | Retrieve information about the loadings obtained using 'omicsCompAnalysis' from an 'caClass-class' |
getMethodInfo | Retrieve information about the components analysis done using 'omicsCompAnalysis' from an 'caClass-class' |
getMethodInfo-method | Retrieve information about the components analysis done using 'omicsCompAnalysis' from an 'caClass-class' |
getPreprocessing | Retrieve information about the preprocessing done in 'omicsCompAnalysis' from an 'caClass-class' |
getPreprocessing-method | Retrieve information about the preprocessing done in 'omicsCompAnalysis' from an 'caClass-class' |
getScores | Retrieve information about the scores obtained using 'omicsCompAnalysis' from an 'caClass-class' |
getScores-method | Retrieve information about the scores obtained using 'omicsCompAnalysis' from an 'caClass-class' |
getVAF | Retrieve information about the VAF obtained using 'omicsCompAnalysis' from an 'caClass-class' |
getVAF-method | Retrieve information about the VAF obtained using 'omicsCompAnalysis' from an 'caClass-class' |
mapdata | STATegRa_initial_data |
modelSelection | Number of optimal common and distinctive components in object-wise data |
modelSelection-method | Number of optimal common and distinctive components in object-wise data |
omicsCompAnalysis | Components analysis for the analysis of object wise data |
omicsCompAnalysis-method | Components analysis for the analysis of object wise data |
PCA.selection | Selection of optimal number of components using PCA |
PCA.selection-method | Selection of optimal number of components using PCA |
plotRes | Plot results of Components Analysis |
plotRes-method | Plot results of Components Analysis |
plotVAF | Function to plot the VAF (Variance Explained For) obtained from Component Analysis. |
plotVAF-method | Function to plot the VAF (Variance Explained For) obtained from Component Analysis. |
selectCommonComps | Select common components of two blocks of object wise omics data. |
selectCommonComps-method | Select common components of two blocks of object wise omics data. |
STATegRa | STATegRa |
STATegRaUsersGuide | View STATegRa User's Guide |
STATegRa_initial_data | STATegRa_initial_data |