$-method | BSgenome objects |
as.list-method | BSgenome objects |
available.genomes | Find available/installed genomes |
available.SNPs | SNP injection |
bsapply | bsapply |
BSgenome | BSgenome objects |
BSgenome-class | BSgenome objects |
BSgenome-utils | BSgenome utilities |
BSgenomeDataPkgSeed | The BSgenomeForge functions |
BSgenomeDataPkgSeed-class | The BSgenomeForge functions |
BSgenomeForge | The BSgenomeForge functions |
BSParams | Class "BSParams" |
BSParams-class | Class "BSParams" |
class:BSgenome | BSgenome objects |
class:BSgenomeDataPkgSeed | The BSgenomeForge functions |
class:BSParams | Class "BSParams" |
class:InjectSNPsHandler | SNP injection |
class:SNPlocs | SNPlocs objects |
coerce-method | Data on the genome |
coerce-method | List of GenomeData objects |
compatibleGenomes | SNPlocs objects |
compatibleGenomes-method | SNPlocs objects |
countPWM-method | BSgenome utilities |
export-method | Export a BSgenome object as a FASTA or twoBit file |
export-methods | Export a BSgenome object as a FASTA or twoBit file |
forgeBSgenomeDataPkg | The BSgenomeForge functions |
forgeBSgenomeDataPkg-method | The BSgenomeForge functions |
forgeMasksFiles | The BSgenomeForge functions |
forgeSeqFiles | The BSgenomeForge functions |
forgeSeqlengthsFile | The BSgenomeForge functions |
gdapply | Applies a function to elements of a GenomeData |
gdapply-method | Applies a function to elements of a GenomeData |
gdReduce | Reduces arguments to a single GenomeData instance |
gdReduce-method | Reduces arguments to a single GenomeData instance |
GenomeData | Data on the genome |
GenomeData-class | Data on the genome |
GenomeDataList | List of GenomeData objects |
GenomeDataList-class | List of GenomeData objects |
getBSgenome | Find available/installed genomes |
getSeq-method | getSeq method for BSgenome objects |
injectSNPs | SNP injection |
injectSNPs-method | SNP injection |
InjectSNPsHandler | SNP injection |
InjectSNPsHandler-class | SNP injection |
installed.genomes | Find available/installed genomes |
installed.SNPs | SNP injection |
length-method | BSgenome objects |
masknames | BSgenome objects |
masknames-method | BSgenome objects |
matchPWM-method | BSgenome utilities |
mseqnames | BSgenome objects |
mseqnames-method | BSgenome objects |
names-method | BSgenome objects |
newSNPlocs | SNPlocs objects |
organism-method | Data on the genome |
organism-method | SNPlocs objects |
provider-method | Data on the genome |
provider-method | SNPlocs objects |
providerVersion-method | Data on the genome |
providerVersion-method | SNPlocs objects |
referenceGenome | SNPlocs objects |
referenceGenome-method | SNPlocs objects |
releaseDate-method | SNPlocs objects |
releaseName-method | SNPlocs objects |
seqinfo-method | BSgenome objects |
seqinfo-method | SNPlocs objects |
seqinfo<--method | BSgenome objects |
seqnames-method | SNPlocs objects |
seqnames<--method | BSgenome objects |
show-method | BSgenome objects |
show-method | Data on the genome |
show-method | SNPlocs objects |
SNPcount | SNP injection |
snpcount | SNPlocs objects |
SNPcount-method | SNP injection |
snpcount-method | SNPlocs objects |
snpcount-method | SNP injection |
snpid2alleles | SNPlocs objects |
snpid2alleles-method | SNPlocs objects |
snpid2grange | SNPlocs objects |
snpid2grange-method | SNPlocs objects |
snpid2loc | SNPlocs objects |
snpid2loc-method | SNPlocs objects |
SNPlocs | SNPlocs objects |
snplocs | SNPlocs objects |
SNPlocs-class | SNPlocs objects |
SNPlocs-method | SNP injection |
snplocs-method | SNPlocs objects |
snplocs-method | SNP injection |
SNPlocs_pkgname | SNP injection |
SNPlocs_pkgname-method | SNP injection |
sourceUrl | BSgenome objects |
sourceUrl-method | BSgenome objects |
species-method | SNPlocs objects |
vcountPattern-method | BSgenome utilities |
vcountPDict-method | BSgenome utilities |
vmatchPattern-method | BSgenome utilities |
vmatchPDict-method | BSgenome utilities |
[[-method | BSgenome objects |
[[<--method | BSgenome objects |