isobar
Analysis and quantitation of isobarically tagged MSMS proteomics data
Bioconductor version: 2.9
isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT.
Author: Florian P Breitwieser <fbreitwieser at cemm.oeaw.ac.at> and Jacques Colinge <jcolinge at cemm.oeaw.ac.at>, with contributions from Xavier Robin <xavier.robin at unige.ch>
Maintainer: Florian P Breitwieser <fbreitwieser at cemm.oeaw.ac.at>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("isobar")
To cite this package in a publication, start R and enter:
citation("isobar")
Documentation
| R Script | Isobar for developers | |
| R Script | Isobar Usage | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | Proteomics, MassSpectrometry, Bioinformatics, MultipleComparisons, QualityControl |
| Depends | R (>= 2.9.0), Biobase, stats, methods, ggplot2, plyr |
| Imports | distr, biomaRt |
| Suggests | MSnbase, OrgMassSpecR, XML |
| System Requirements | |
| License | LGPL-2 |
| URL | http://bioinformatics.cemm.oeaw.ac.at |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.1.1 |
| Since | Bioconductor 2.9 (R-2.14) |
Package Downloads
| Package Source | isobar_1.1.1.tar.gz |
| Windows Binary | isobar_1.1.1.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | isobar_1.1.1.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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