clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.9

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("clusterProfiler")

To cite this package in a publication, start R and enter:

    citation("clusterProfiler")

PDF	R Script	An introduction to clusterProfiler
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics, Clustering, GO, Pathways, Visualization, MultipleComparisons
Depends	stats, ggplot2, plyr
Imports	methods, DBI, qvalue, AnnotationDbi, GO.db, KEGG.db, org.Hs.eg.db, org.Mm.eg.db, org.Sc.sgd.db
Suggests	GOSemSim, DOSE
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me	DOSE, GOSemSim
Version	1.2.1
Since	Bioconductor 2.8 (R-2.13)

Common Bioconductor workflows include:

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