VariantAnnotation

Annotation of Genetic Variants

Bioconductor version: 2.9

Annotate variants with respect to location and amino acid coding

Author: Michael Lawrence and Valerie Obenchain

Maintainer: Valerie Obenchain <vobencha at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("VariantAnnotation")

To cite this package in a publication, start R and enter:

    citation("VariantAnnotation")

PDF	R Script	Introduction to VariantAnnotation
PDF		Reference Manual
Text		NEWS

biocViews	DataImport, Sequencing, HighThroughputSequencing, SNP, AnnotationData, Genetics, Homo_sapiens
Depends	methods, R (>= 2.8.0), GenomicRanges, Biostrings, AnnotationDbi, Rsamtools
Imports	AnnotationDbi, Biobase, BSgenome, GenomicFeatures, IRanges(>= 1.11.17), snpStats, DBI
Suggests	RUnit, BSgenome.Hsapiens.UCSC.hg18, TxDb.Hsapiens.UCSC.hg18.knownGene, SNPlocs.Hsapiens.dbSNP.20090506, TxDb.Dmelanogaster.UCSC.dm3.ensGene, BSgenome.Dmelanogaster.UCSC.dm3, PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP132
System Requirements
License	Artistic-2.0
URL
Depends On Me	PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP132
Imports Me
Suggests Me
Version	1.0.5
Since	Bioconductor 2.9 (R-2.14)

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