exomeCopy-package | Detection of CNV in exome/targeted sequencing data |
copyCountSegments | Segments of identical copy count from exomeCopy |
countBamInGRanges | Count reads from BAM file in genomic ranges |
exomeCopy | Fit the exomeCopy or exomeCopyVar model to the observed counts. |
ExomeCopy-class | Class "ExomeCopy" |
exomecounts | Sample counts from 16 exome sequencing samples from 1000 Genomes Project |
negLogLike | Generalized negative log likelihood and Viterbi algorithms |
plot-method | Class "ExomeCopy" |
plot.ExomeCopy | Plot function for exomeCopy |
show-method | Class "ExomeCopy" |
subdivideGRanges | Subdivide ranges of a GRanges object into nearly equal width ranges |
viterbiPath | Generalized negative log likelihood and Viterbi algorithms |