FASTASummary-class | 'FASTASummary' class representing the summaries of a FASTA file |
FASTQSummary-class | 'FASTQSummary' class representing the summaries of a FASTQ file |
makeReport | Make an HTML report from a FASTASummary of FASTQSummary object |
makeReport-method | 'FASTASummary' class representing the summaries of a FASTA file |
makeReport-method | 'FASTQSummary' class representing the summaries of a FASTQ file |
makeReport-methods | Make an HTML report from a FASTASummary of FASTQSummary object |
plotBases | Plot Bases by Position |
plotBases-method | 'SequenceSummary' class representing the summaries of a sequence file |
plotBases-methods | Plot Bases by Position |
plotGC | Plot per Base GC Content by Position |
plotGC-method | 'SequenceSummary' class representing the summaries of a sequence file |
plotGC-methods | Plot per Base GC Content by Position |
plotQuals | Plot a Base Quality Boxplot by Position |
plotQuals-method | 'FASTQSummary' class representing the summaries of a FASTQ file |
plotQuals-methods | Plot a Base Quality Boxplot by Position |
plotSeqLengths | Plot Histogram of Sequence Lengths |
plotSeqLengths-method | 'SequenceSummary' class representing the summaries of a sequence file |
plotSeqLengths-methods | Plot Histogram of Sequence Lengths |
readSeqFile | Read and Summarize a Sequence (FASTA or FASTQ) File |
SequenceSummary-class | 'SequenceSummary' class representing the summaries of a sequence file |