| Package | Maintainer | Title |
|---|---|---|
| crlmm | Benilton S Carvalho , Robert Scharpf , Matt Ritchie | Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays. |
| GeneRegionScan | Lasse Folkersen | GeneRegionScan |
| logicFS | Holger Schwender | Identification of SNP Interactions |
| oligo | Benilton Carvalho | Tools for low-level analysis of oligonucleotide arrays. |
| siggenes | Holger Schwender | Multiple testing using SAM and Efron's empirical Bayes approaches |