To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("sangerseqR")

In most cases, you don't need to download the package archive at all.

sangerseqR

Tools for Sanger Sequencing Data in R

Bioconductor version: 2.14

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at genetics.utah.edu>

Citation (from within R, enter citation("sangerseqR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("sangerseqR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("sangerseqR")

 

PDF R Script sangerseqR
PDF   Reference Manual

Details

biocViews SNP, Sequencing, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends R (>= 3.0.2), Biostrings
Imports methods
Suggests BiocStyle, knitr, RUnit, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source sangerseqR_1.0.0.tar.gz
Windows Binary sangerseqR_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) sangerseqR_1.0.0.tgz
Mac OS X 10.9 (Mavericks) sangerseqR_1.0.0.tgz
Browse/checkout source (username/password: readonly)
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