To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rTRM")

In most cases, you don't need to download the package archive at all.

rTRM

Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: 2.14

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rTRM")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

biocViews	GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version	1.2.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	R (>= 2.10), igraph (>= 0.7), RSQLite
Imports	AnnotationDbi
Suggests	RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
System Requirements
URL
Depends On Me
Imports Me	rTRMui
Suggests Me

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